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The crescent-like Golgi ribbon is shaped by the Ajuba/PRMT5/Aurora-A complex-modified HURP
Cell Communication and Signaling volume 21, Article number: 156 (2023)
Abstract
Background
Golgi apparatus (GA) is assembled as a crescent-like ribbon in mammalian cells under immunofluorescence microscope without knowing the shaping mechanisms. It is estimated that roughly 1/5 of the genes encoding kinases or phosphatases in human genome participate in the assembly of Golgi ribbon, reflecting protein modifications play major roles in building Golgi ribbon.
Methods
To explore how Golgi ribbon is shaped as a crescent-like structure under the guidance of protein modifications, we identified a protein complex containing the scaffold proteins Ajuba, two known GA regulators including the protein kinase Aurora-A and the protein arginine methyltransferase PRMT5, and the common substrate of Aurora-A and PRMT5, HURP. Mutual modifications and activation of PRMT5 and Aurora-A in the complex leads to methylation and in turn phosphorylation of HURP, thereby producing HURP p725. The HURP p725 localizes to GA vicinity and its distribution pattern looks like GA morphology. Correlation study of the HURP p725 statuses and GA structure, site-directed mutagenesis and knockdown-rescue experiments were employed to identify the modified HURP as a key regulator assembling GA as a crescent ribbon.
Results
The cells containing no or extended distribution of HURP p725 have dispersed GA membranes or longer GA. Knockdown of HURP fragmentized GA and HURP wild type could, while its phosphorylation deficiency mutant 725A could not, restore crescent Golgi ribbon in HURP depleted cells, collectively indicating a crescent GA-constructing activity of HURP p725. HURP p725 is transported, by GA membrane-associated ARF1, Dynein and its cargo adaptor Golgin-160, to cell center where HURP p725 forms crescent fibers, binds and stabilizes Golgi assembly factors (GAFs) including TRIP11, GRASP65 and GM130, thereby dictating the formation of crescent Golgi ribbon at nuclear periphery.
Conclusions
The Ajuba/PRMT5/Aurora-A complex integrates the signals of protein methylation and phosphorylation to HURP, and the HURP p725 organizes GA by stabilizing and recruiting GAFs to its crescent-like structure, therefore shaping GA as a crescent ribbon. Therefore, the HURP p725 fiber serves a template to construct GA according to its shape.
Background
The Golgi apparatus (GA) in mammalian cells forms a continuous ribbon of laterally interconnected stacks of flat cisternae. The construction of GA architecture relies on posttranslational modifications of soluble Golgi assembly factors (GAFs) and is subjected to dynamic changes along a cell cycle [2]. At G2 phase, phosphorylation-induced inactivation of GRASP65 [7] or GRASP55 [15], two GAFs engaged in stacking and linking cis- and trans-Golgi respectively, leads to the unlinking of the inter-connected stacks of the organelle. At early mitosis, further phosphorylation of the two GRASPs causes GA unstacking [41, 45]. Subsequently, phosphorylation of GBF1, the activator of ARF1, dissociates GBF1 from Golgi membrane and inactivates ARF1, further breaking GA into Golgi blobs or hazes throughout mitotic cytoplasm [1, 28, 31]. ARF1 is a key GAF recruiting a range of downstream GAFs to GA, thereby initiating GA assembly process [23]. For example, ARF1 induces a constant centripetal transport of Golgi membranes to assemble GA at the cell center by attracting Golgin-160, a Dynein cargo adaptor engaged in transporting Golgi membranes [46]. TRIP11, mustered by ARF1, participates in asymmetric tethering of flat and curved lipid membranes [14] and homotypic fusion of cis-cisternae [6]. In addition to ARF1-dependent pathways, some GAFs such as GM130 are recruited to GA in an ARF1 independent manner [17]. GM130, p115 and Giantin form a complex that captures COPI vesicles on the cis-Golgi for future fusion [40], and phosphorylation of p115 is required for Golgi assembly [12]. The final stage of Golgi assembly is accomplished by the linking of Golgi stacks, thereby lengthening GA into an extended ribbon. Many factors are involved in the linking process such as TRIP11 [35], GRASP65 and GM130 [34], and methylation of GM130 by PRMT5 is important for Golgi ribbon construction [49]. A study points out that 159 genes, nearly 20% of the genes assayed, in the human genome encoding kinases or phosphatases participate in the regulation of GA architecture [10], which reflects GA assembly is regulated by a huge number of protein modifications. However, most of such modifications on GAFs, such as phosphorylation or methylation, remain unidentified. Intriguingly, the lengthened Golgi ribbon displays a bent architecture and looks like a crescent under the fluorescence microscope. How the Golgi membranes are assembled as a crescent-like ribbon with a curved architecture is completely unknown.
To explore how the GA is shaped as a crescent organelle under the guidance of protein modifications, we firstly identify a protein complex which is organized by a scaffold protein Ajuba [29] and contains two reported GA regulators, i.e. arginine methyltransferase PRMT5 [49] and serine/threonine kinase Aurora-A [25], and their common substrate HURP [11, 48]. HURP is a versatile factor regulating spindle stability [39] and chromosome congression [47], promoting G1/S cell cycle progression [8], and inhibiting apoptosis [18]. Mutual modification and subsequent activation of PRMT5 and Aurora-A in the protein complex catalyzes the methylation and in turn phosphorylation of HURP. HURP p725, i.e. the HURP with phosphorylation at S725, is then transported by ARF1/Golgin-160/Dynein to the cell center, where HURP p725 displays a crescent-like structure, binding and stabilizing GAFs such as TRIP11, GRASP65 and GM130, thereby facilitating the assembly of the bulky GA along the strong, crescent HURP p725 structure.
Methods
Antibodies, shRNA, plasmids, and reagents
The following antibodies were used in the study: alpha tubulin (sc-5286), Golgin-160 (sc79966), actin (sc-8432), PRMT5 (sc-22132), Ajuba (sc-374610), GP73 (48010), and ARF1 (sc053168) were purchased from Santa cruz; GRASP65 (ab174834), Aurora-A (ab1287), Aurora-A p288 (ab83968), and GBF1 (ab86071) were from Abcam; c-Myc (M4439), HA (H3663) and FLAG (F7425) were from Sigma; GM130 (H00002801-B01P) was from Abnova; TRIP11 (MA 1–23294) and Dynein (MA 1–070) were from Thermo; GFP (11814460001) from Roche; GRASP55 (10598–1-AP) from Proteintech; ERGIC3 (CSB-PA896688LA01HU) from Cusabio. The shRNA clones carried in Lentivirus backbone were from National RNAi Core Facility at Academia Sinica in Taiwan with the following clone number and target sequence: Luciferase, GCGGTTGCCAAGAGGTTCCAT; HURP, GCACAGCAGTTGGTCAAACAA; PRMT5, GCCCAGTTTGAGATGCCTTAT; Ajuba, GCTCCTTATCTGTCTGAGAAT; TRIP11, GCAAAGGAACAAGAACTCAAT; GRASP65, CGAGGACTTCTTTACGCTCAT; Aurora-A, CCTGTCTTACTGTCATTCGAA; ARF1, AGAAATTGGAGAAAGTTAAAG; GBF1, CACGACACTAAGTCTCTGCTT; Golgin-160, GCAGAACGTCAAGTCTGAGTT. The expression plasmids used in the study were from different donors including Myc-Ajuba from Dr. Hirota [19], Myc-GRASP65 from Dr. Feng [16], EGFP-Golgin-160 from Dr. Maag [27], GFP-TRIP11 from Dr. Lee [9], and HA-ARF1 WT and T31N were from addgene. EGFP-HURP R122K and 122F were from our previous study [11], HA-HURP 725A and 725E were from our previous study [42], The key chemicals such as BFA (Brefeldin A), T3 (3’,5-Triiodo-L-thyronine sodium salt), and cycloheximide were from Sigma-Aldrich; Ciliobrevin D from MERCK.
Preparation of antibodies against methyl- or phospho-antibodies
The antibodies against Aurora-A m304 or nm304, PRMT5 p103 or np103, HURP m122 or nm122, HURP p725 or np725, were generated by immunizing rabbits or mice with commercially synthesized KLH-linked peptides containing methyl-R or phospho-S/T at the center of the following sequences: Aurora-A m304, PPEMIEG(mR)MHDEKVD; PRMT5 p103, VEKIRRN(pS)EAAML; HURP m122, GIFKVG(mR)YRPDMP; HURP p725, LSSERM(pS)LPLLA. The peptides were conjugated to a KLH-hapten carrier protein to generate significant immune response. The corresponding unmodified peptide counterparts with same sequences were also synthesized for affinity purification and subsequent validation. The elicited antibodies were affinity-purified from the antisera by columns packed with the same peptides used for immunization through two processes. Firstly, the antisera were applied to the unmodified peptides-packed column, and the flow-through was subjected to the second column packed with modified peptide. The absorbed antibodies in the second column were eluted and considered as antibodies recognizing modified peptide. Alternatively, the absorbed antibodies in the first column were eluted and applied to the modified peptide-packed column, and the resulted flow-through was the antibodies recognizing unmodified peptide. Finally, dot blot and Western blot were adopted to validate the antibodies.
Site-directed mutagenesis
The phosphorylation or methylation mutants employed in the study, including EGFP-PRMT5 S103A, FLAG-Aurora-A R304K, EGFP-HURP R122K, EGFP-HURP S725A and S725E, EGFP-TRIP11, were generated using PCR-based mutagenesis (QuickChange Site-Directed Mutagenesis Kit, Agilent Technologies) according to manufactory’s instruction. The employed primer sequences were listed in the followings: HURP R122K (forward), GGA ATA TTT AAA GTG GGT AAG TAT AGA CCT GAT ATG CC, HURP R122K (reversed), GG CAT ATC AGG TCT ATA CTT ACC CAC TTT AAA TAT TCC; HURP R122F (forward), GGA ATA TTT AAA GTG GGT TTT TAT AGA CCT GAT ATG CC, HURP R122F (reversed), GG CAT ATC AGG TCT ATA AAA ACC CAC TTT AAA TAT TCC; HURP S725A (forward), TTT ATC CAG TGA GAG AAT GGC TTT GCC TCT TCT TGC TGG TG, HURP S725A (reversed), CAC CAG CAA GAA GAG GCA AAG CCA TTC TCT CAC TGG ATA AA; HURP S725E (forward), TTG TTT ATC CAG TGA GAG AAT GGA GTT GCC TCT TCT TGC TGG TGG AG, HURP S725E (reversed), CTC CAC CAG CAA GAA GAG GCA ACT CCA TTC TCT CAC TGG ATA AAC AA; Aurora-A R304K (forward), G CCC CCT GAA ATG ATT GAA GGT TTT ATG CAT GAT GAG AAG GTG GAT C, Aurora-A R304F (reversed), G ATC CAC CTT CTC ATC ATG CAT AAA ACC TTC AAT CAT TTC AGG GGG C; PRMT5 S103A (forward), GAT TCG CAG GAA CGC CGA GGC GGC CAT, PRMT5 S103A (reversed), ATG GCC GCC TCG GCG TTC CTG CGA ATC.
Cell lines and cell cultures
The 293 (HEK293), 293T and HeLa (ATCC CRL-1573, CRL-3216 and CCL-2 respectively) were maintained in a humidified incubator at 37 ˚C in the presence of 5% CO2, and were grown in a DMEM medium containing 5% FBS, 100 unit/mL penicillin and 100 μg/mL streptomycin.
Cell Cultures, transfection and lentiviral-based RNA interference
The 293, 293T and HeLa were maintained in a humidified incubator at 37 ˚C in the presence of 5% CO2, and were grown in a DMEM medium containing 5% FBS, 100 unit/mL penicillin and 100 μg/mL streptomycin. Transfection was performed with Lipofectamine™ 2000 (Life Technologies) or Polyjet™ (SignaGen Laboratories) according to the manufacturer’s instructions. The shRNAs carried by lentiviral backbones were obtained from the National RNAi core facility (Institute of Molecular Biology, Academia Sinica, Taiwan) with the targeting sequences listed in key resources table.
Preparation of cell extracts, Western blot, and immunoprecipitation
The cell extracts were prepared using an extraction buffer consisting of 50 mM Tris pH7.5, 0.1% SDS, 1% NP40, 0.5% sodium deoxycholate, 1% Triton X-100, 5 mM EDTA, 150 mM NaCl, and 150 mM KCl. Protein concentration was determined by the Bradford assay (Bio-Rad). Equal amounts of total lysates were used for further analyses, or loaded onto a 10% SDS–polyacrylamide electrophoresis gel (SDS-PAGE) and transferred onto a PVDF membrane (Amersham). The PVDF membranes were blocked with 5% skimmed milk/TBST (150 mM Sodium Chloride, 20 mM Tris, 0.1% Tween-20, pH 7.6). Primary antibodies were incubated with the membranes at 4 °C for 2 h. The membranes were washed with TBST for 30 min and this was repeated 3 times. Secondary antibodies, conjugated with alkaline phosphatase (AP, Santa cruz) or horseradish peroxidase (HRP, AffiniPure, Jackson ImmunoResearch), were added for 1 h, followed by washing with TBST for 3 × 30 min. AP’s substrate BCIP/NBT (Renaissance, PerkinElmer), or HRP’s substrate (WesternBright, Advansta) were added to develop the membranes. As to immunoprecipitation, 1–2 mg of cell extracts with protease inhibitor cocktail (Roche) were incubated with protein A/G beads (Roche) in 500 μl immunoprecipitation washing buffer (50 mM HEPES, pH 7.6, 2 mM MgCl2, 50 mM NaCl, 5 mM EGTA, 0.1% Triton X-100, 40 mM glycerolphosphate) at 4 °C for 1 h to preabsorb unwanted proteins. 1 μg antibody were then added to the cell extracts for 4 h at 4 °C. The cell extracts were incubated with protein A/G-beads for 1 h, followed by 3–6 changes of TBST wash for 3 h at 4 °C. The resulting samples were heated at 95 °C for 10 min and applied to SDS-PAGE-based electrophoresis.
Analysis of GA, HURP p725 by indirect immunofluorescence analysis
Cells seeded on coverslips were washed with PBS and fixed with periodate-lysine-paraformaldehyde containing 0.01 M periodate, 0.075 M lysine, 2% paraformaldehyde, 0.37 M phosphate buffer [30] at room temperature for 15 min. The fixed cells were incubated with permeabilization/blocking solution (75 mM NH4Cl, 20 mM Glycin pH8.0, 0.025% saponin, 0.2% BSA) at room temperature for 30 min. Sequentially, cells were incubated with primary antibodies at room temperature for 1 h, followed by 3 washes with TBST, and then incubated with DNA staining dye DAPI (4’,6-diamidino-2-phenylindole) (Sigma) and secondary antibody conjugated with Alexa Fluor 488 or Alexa Fluor 594 (Invitrogen) for 1 h at room temperature. After washing with TBST, the samples were mounted with Dako Mounting Medium (Agilent Technologies). The fluorescence images were analyzed using a fluorescence microscope (Leica DM2500) with Zyla sCMOS camera (Andor Technology). To analyze the structure of GA or HURP p725, 200 cells for each independent experiment were examined, and 3 independent experiments were performed. The GA structure was classified as the following criteria according to published papers [21, 49]: Ribbon, GA with continuous crescent shape; Compact, GA with ball-like appearance; Fragmentation, GA with discontinuous fragments scattering around the nucleus or cytoplasm. As to the measurement of the length of HURP p725 or GA, 20 cells were examined with the image analysis software MetaVue version 7.8.0.0 (Molecular Devices) for each independent experiment and 3 independent experiments were performed.
In vitro methylation reaction
PRMT5-dependent methylation reaction was based on the methodology published elsewhere with modifications [49]. Briefly, the EGFP-PRMT5 and HURP were purified by immunoprecipitation adopting anti-GFP or HURP antibodies. The precipitates were rinsed two times with methylation buffer (50 mM Tri-HCl, pH 7.5, 1 mM EDTA and 1 mM EGTA), and then incubated with the methyl donor H3-S-adenosylmethionine in the presence of methylation buffer at 30 °C for 30 min, which was then stopped by adding SDS-PAGE sample buffer (Sigma).
In vitro kinase reaction
The PRMT5 or HURP protein, obtained from immunoprecipitation, was incubated with recombinant His-Aurora-A in kinase reaction buffer (Tris HCl, pH 7.4, 10 mM MgCl2, 10 μM ATP, 2 mM EGTA, 1 mM DTT, 1 mM Na3VO4, 0.5 mM PMSF, 10% glycerol and with or without the presence of [γ-32P]-ATP at 30 °C for 30 min, which was then stopped by adding SDS-PAGE sample buffer. Dephosphorylation reaction was conducted employing His-λ phosphatase in buffer with 50 mM HEPES, pH7.5, 0.1 mM EDTA, 2 mM MnCl2 and 5 mM DTT at 30 °C for 30 min.
Native-gel electrophoresis
Cells were lysed using the NativePAGE sample buffer (ThermoFisher Scientific) in the presence of 10% n-Dodecyl-β-D-maltoside (DDM) and 5% Digitonin. After centrifugation at 4 °C for 1 h, cell lysates were separated by gradient NativePAGE (4 to 16%). A buffer containing 0.5 M Tris (pH 9.2) and 0.5 M glycine was used for protein transfer. After transfer, the PVDF membrane was incubated in 20 ml of 7.5% acetic acid for 15 min at room temperature to fix the proteins. The membrane was subsequently rinsed with methanol and deionized water to remove the residual Coomassie blue G-250 dye. Western blots were then followed.
Gel filtration
Cells were lysed with TNE buffer, containing 10 mM Tris–HCl (pH 7.8), 1% NP-40, 0.15 M NaCl, 1 mM EDTA, 1 mM phenylmethylsulfonyl fluoride (PMSF), and protease inhibitor cocktail. The cell lysates were then applied to a HiLoad 16/60 Superdex 75-pg column or a Superdex 75 10/300 GL column (GE Healthcare Life Science). The fractions were collected for further analyses.
Statistical analysis
Student’s t-test was employed in all the experiments required for statistical analysis.
Results
PRMT5 methylates Aurora-A at R304 in the Ajuba-organized protein complex
To explore the potential contribution of protein modifications to GA assembly, we focused the following studies on two GA regulators with protein modifying activities, i.e., Aurora-A and PRMT5. We noticed that the scaffold protein Ajuba, localized to GA area according to the Human Protein ATLAS website (https://www.proteinatlas.org/ENSG00000129474-AJUBA/cell) on the basis of a study [43], is documented able to interact with Aurora-A [19] and PRMT5 [20], and our previous works show that Aurora-A phosphorylates HURP at S725 [48], and PRMT5 methylates HURP at R122 [11]. All these observations prompted us to speculate the potential formation of the protein complex containing Ajuba, PRMT5, Aurora-A and HURP. Indeed, Ajuba, Aurora-A and HURP were coprecipitated in immunoprecipitation assays employing antibodies against PRMT5 (Fig. 1A). Overexpression or knockdown of Ajuba enhanced or weakened interaction of the components in the protein complex (Fig. 1B), implying that Ajuba assembles the protein complex. To understand the molecular significance of the protein complex, we firstly found that PRMT5 methylated Aurora-A in vitro (Fig. 1C). We compared the protein sequence flanking the methylation site of 26 PRMT5’ substrates (Supplementary Figure 1), and a consensus sequence was deduced, i.e. NAl-X-NAl-R-NAl, where underlined R stands for the methylation site arginine, NAl represents nonpolar aliphatic amino acid, and X is any amino acid. Luckily, there is only one site that fits the consensus sequence in Aurora-A protein, namely 301I-E–G-R-M305. Subsequently, we performed site-directed mutagenesis and found that PRMT5 methylated Aurora-A R304K much less efficiently than methylated its wild type (WT) version (Fig. 1D). Furthermore, the antibodies against Aurora-A m304, i.e., the methylated form of Aurora-A at R304, were created, and knockdown (Fig. 1E, left) or overexpression (Fig. 1E, right) of PRMT5 decreased or increased the level of endogenous Aurora-A m304, collectively indicating that PRMT5 methylates Aurora-A at R304. Interestingly, compared to the Aurora-A WT, the Aurora-A R304K mutant had a lower level of Aurora-A p288 signal (Fig. 1F), the active form of Aurora-A [13], and knockdown (Fig. 1G) or overexpression (Fig. 1H) of PRMT5 reduced or increased the level of active Aurora-A without affecting the level of general Aurora-A. Furthermore, our previous studies show that Aurora-A phosphorylates HURP at serine residues including S725 [48]. Unlike the WT version of Aurora-A, the R304K mutant failed to restore the level of HURP p725 in Aurora-A knockdown cells (Fig. 1I). These lines of evidence together manifest themselves that PRMT5 methylates and in turn activates Aurora-A.
Aurora-A phosphorylates PRMT5 at S103
The interaction of Aurora-A and PRMT5 does not only facilitate PRMT5 to methylate Aurora-A, but also provides an opportunity for Aurora-A to phosphorylate PRMT5. As shown in Fig. 2A, Aurora-A could phosphorylate PRMT5 in vitro. To map the phosphorylation site, we firstly applied the PRMT5’s protein sequence to the public assessable phosphorylation prediction website, NetPhos 2.0 server (http://www.cbs.dtu.dk/services/NetPhos/), and S15, S16, S103, S273 and S446 were predicted as the most potential general phosphorylation sites with a score greater than 0.990. Secondly, the 5 sites were subjected to the website GPS 3.0-Kinase-specific Phosphorylation Site Prediction (http://gps.biocuckoo.org/), and PRMT5 S103 was predicted as the only potential phosphorylation site of Aurora-A. Indeed, the PRMT5 S103A could not be phosphorylated by Aurora-A (Fig. 2B). The antibodies against PRMT5 p103, i.e., the phosphorylated PRMT5 at S103, were then created, and knockdown (Fig. 2C) or overexpression (Fig. 2D) of PRMT5 diminished or elevated the level of endogenous PRMT5 p103. Our previous studies show that PRMT5 methylates HURP at R122 [11], and the current study revealed that unlike PRMT5 WT, the S103A mutant no longer restored the level of HURP m122 in PRMT5 knockdown cells (Fig. 2E). All these lines of evidence imply that Aurora-A is able to phosphorylate PRMT5 at S103, and which is crucial for PRMT5 to methylate HURP.
PRMT5-induced HURP methylation is required for Aurora-A-catalyzed HURP phosphorylation
To investigate the potential mutual influence of the two modifications, it was found that HURP 122K could not undergo phosphorylation at S725 (Fig. 3A), and the HURP p725 signal was only detected on the HURP m122 antibodies-, rather than HURP nm122 antibodies-, based precipitates in immunoprecipitation assays (Fig. 3B), where HURP nm122 stands for the HURP not being methylated at R122. The HURP m122 antibodies and nm122 antibodies had no or very weak cross-reaction (Supplementary Figure 2). On the contrary, the level of HURP m122 signal on HURP 725A was similar to that of HURP WT (Fig. 3C), together implying that the modification of HURP p725 requires the presence of HURP m122 but not the vice versa. Furthermore, depletion of Ajuba largely reduced the level of HURP m122, HURP p725, PRMT5 p103 and Aurora-A m304 without affecting the general HURP, PRMT5 and Aurora-A (Fig. 3D), indicating that the modifications of HURP p725, PRMT5 p103 and Aurora-A m304 rely on the formation of the complex Ajuba/PRMT5/Aurora-A. All these collected data indicate that, Ajuba keeps PRMT5 and Aurora-A together, allowing them to activate each other, and sequentially HURP p725 is produced (Fig. 3E).
HURP p725 is required for the formation of crescent Golgi ribbon
To explore the cellular functions of HURP p725, we detected the subcellular localization of HURP p725 and np725, the HURP without phosphorylation at S725. There was no cross-reaction between HURP p725 antibodies and np725 antibodies (Supplementary Figure 3). Unlike the cytoplasmic distribution of np725, HURP p725 was localized to GA region in interphase cells (Fig. 4A), and had spatial distribution closer to cis-Golgi (Fig. 4B). Besides, the distribution pattern of HURP p725 resembled GA structure (Fig. 4C). For example, when the cells with HURP p725 in crescent-like ribbon (simply designated as ribbon hereafter) were selectively examined, 60% of these cells had their GA in crescent ribbon shape (ribbon) (Fig. 4C-I, II). Alternatively, more than 50% of cells with Golgi in ribbon form had HURP p725 in ribbon-like shape (Fig. 4C-I, III). To unravel the potential contribution of HURP p725 to GA formation, we found that HURP p725, rather than np725 which localized to the spindle, distributed as a long fiber-like pattern in early mitosis, and two shorter HURP p725 fiber-like segments were detected during cytokinesis (Fig. 4D), where it is known that GA begins to reform from tiny Golgi membranes. Interestingly, HURP p725 did not always symmetrically segregate into two daughter cells in a cell doublet during cytokinesis in HeLa cells. HURP p725 was sometimes detected in only one cell of a cell doublet. We seeded cells with low density, so that cells did not contact each other. Subsequently, we examined the post-mitotic cell doublets, which contained two smaller connected cells, with asymmetrically segregated HURP p725, i.e., HURP p725 was absent in one daughter cell of a cell doublet, and found that the cell losing HURP p725 had GA membranes scattering around the cytoplasm, while the other cell possessing HURP p725 had GA membranes with a higher compacting tendency (Fig. 4E-I, II). The length of HURP p725 segment in the cell asymmetrically obtaining HURP p725 of a cell doublet was much longer than that in the cell doublet symmetrically or equally gaining HURP p725 (Fig. 4E-I, III); subsequently, the cells with longer HURP p725 also had a longer GA structure (Fig. 4E-I, IV). These data reveal a structural correlation of HURP p725 and GA status. Further causal study adopting site-directed mutagenesis showed that GA was fragmented in HURP knockdown cells, and HURP WT and the phosphorylation mimicking mutant 725E could restore the Golgi ribbon. By contrast, the phosphorylation deficiency mutant 725A could not rescue Golgi ribbon in HURP knockdown cells (Fig. 4F). Besides, the HURP methylation deficiency mutant 122K lost the Golgi ribbon constructing activity (Fig. 4G) and knockdown of Ajuba disorganized GA (Fig. 4H), in line with the finding that HURP m122 is required for the production of HURP p725 in the Ajuba-organized protein complex.
HURP p725 regulates the localization and protein stability of TRIP11
To understand how HURP p725 dictates the formation of Golgi ribbon, we found a cis-Golgi protein TRIP11 [22], selectively interacted with HURP WT, 725E or endogenous HURP p725, while did not bind 725A or np725 (Fig. 5A and B). Knockdown of TRIP11 disassembled GA and did not disturb the distribution of HURP p725 (Fig. 5C), not only implying that TRIP11 does not guide the subcellular distribution of HURP p725, but also revealing that localization of HURP p725 to GA area does not rely on the presence or structural integrity of Golgi ribbon. In support of that notion, the thyroid hormone triiodothyronine (T3)-induced nuclear targeting of TRIP11 did not move HURP p725 into the nucleus (Fig. 5D). By contrast, silence of HURP mislocalized TRIP11 (Fig. 5C). Moreover, overexpression of the HURP deletion mutant 1–300, which retained the interaction domain for TRIP11 (Fig. 5E) and localized to the nucleus (Fig. 5F), forced the GAF, TRIP11, away from GA and targeting to the nucleus (Fig. 5F), which in turn fragmentized GA (Fig. 5G). Further study revealed that TRIP11 protein was unstable in HURP depletion cells (Fig. 5H), collectively suggesting that HURP p725 interacts with, stabilizes and dictates localization of TRIP11.
HURP p725 binds and stabilizes more cis-GAFs
In addition to TRIP11, HURP p725 also interacted with several other cis-GAFs, such as GRASP65 [44], GM130 [33] and GP73 [3] (Fig. 6A), and did not bind to the trans-GAF such as GRASP55 [38] (Fig. 6B). Consistently, GRASP65, GM130 and G73 bound to EGFP-HURP WT and 725E, while did not interact with 725A (Fig. 6C). Similarly, those cis-GAFs, rather than trans-GAF GRASP55, had reduced protein stability in HURP knockdown cells (Fig. 6D). Taking all the pieces of evidence together, HURP p725 assembles GA by binding and stabilizing those cis-GAFs.
ARF1/Golgin-160 controls the subcellular localization of HURP p725
To further investigate the mechanisms by which HURP p725 is organized as a crescent-like structure and integrate the HURP p725-mediated regulation of Golgi ribbon formation to the known GA regulatory networks, we began by addressing how HURP p725 is localized to the vicinity of GA. It was found firstly that the Golgi disrupting agent BFA [37] dispersed the distribution, and did not decrease the protein level, of HURP p725 (Fig. 7A). The dispersal of HURP p725 localization was not caused by the structural disruption of GA, because knockdown of TRIP11-induced Golgi disassembly did not interfere with the localization of HURP p725 (Fig. 5C). Moreover, the HURP molecules, no matter tagged by EGFP or HA, migrated on native gels with various sizes ranging from 146 kD to 720 kD (Fig. 7B). Treatment of BFA dramatically reduced the heterogeneity of HURP and shifted the electrophoretic position of HURP to the molecular weight of 66 ~ 146 kD, roughly equivalent to the molecular weight of a single HURP molecule (Fig. 7B, left and middle). Interestingly, HURP p725 was found migrating at the highest position among the whole HURP species in the native gel electrophoresis (Fig. 7B, right), and its mobility was also enhanced by BFA, hinting the BFA-sensitive HURP p725 is organized as a high-order structure in cells. Similarly, gel filtration studies detected the majority of EGFP-HURP in the fractions of cell extracts with molecular weight near or higher than 669 kD; nevertheless, HURP was observed in the fractions with molecular weight lower than 669 kD when cells were exposed to BFA (Fig. 7C). To further uncover how BFA disturbs HURP p725, it was learned that BFA directly binds and inactivates ARF1 and its GTP/GDP exchange factor GBF1 [36]. Silence of ARF1 or GBF1 turned the ribbon-like bundle of HURP p725 into dispersed form (Fig. 7D), however, ARF1 did not interact with HURP p725 (Fig. 7E), implying that ARF1 controls HURP p725 indirectly. Given that ARF1 gathers small Golgi membranes via recruiting the Dynein cargo adaptor Golgin-160, chemical inhibition of cytoplasmic Dynein (Fig. 7F) or silence of Golgin-160 (Fig. 7G) dispersed HURP p725, and Golgin-160 interacted with HURP p725, and did not bind to np725 (Fig. 7H). All these findings collectively indicate that the Golgin-160/Dynein complex regulates subcellular localization of HURP via binding and transporting HURP under the guidance of ARF1.
Discussion
The Ajuba/PRMT5/Aurora-A complex integrates the signals of protein methylation and phosphorylation to HURP
Ajuba is originally identified as an Aurora-A activator [19] and the activation mechanisms have been reported later on [4]. On the other hand, the activation mechanisms of PRMT5 remain elusive [24]. We here identify a distinct mechanism for how Ajuba activates Aurora-A and how PRMT5 is activated, where Ajuba assembles the PRMT5 and Aurora-A complex, and reciprocal modifications of the two enzymes trigger the activation of them. Hence, Ajuba integrates the signaling from protein phosphorylation and methylation via scaffolding Aurora-A and PRMT5, and the signals are relayed to their common substrate HURP. It is likely that methylation at N-terminal (R122) and phosphorylation at C-terminal (S725) of HURP which contains 846 amino acids, could induce dramatic conformational changes entirely by increasing the hydrophobicity and hydrophilicity of the two ends of HURP simultaneously, thereby exposing its GAF-interacting domain and in turn promoting the assembly of crescent Golgi ribbon by recruiting and stabilizing GAFs.
HURP p725 assembles Golgi ribbon from GA cis-side
The GA structure is maintained in a dynamic equilibrium between input and output of membranes from and to other organelles, including the endoplasmic reticulum (ER), the endosome–lysosome system, and the plasma membrane [26]. The COPI vesicles from ER are captured and tethered to the cis-cisternae by the tertiary Giantin-p115-GM130 tethering complex prior to membrane fusion during GA assembly [32]. Moreover, the cis-GAF Golgin-160 centripetally transports Golgi vesicles also to the cis-Golgi [46]. All these observations indicate that GA structurally grows at its cis-side. In support of this notion, our analyses show that the HURP p725 localizes to the cis-Golgi and binds cis-GAFs rather than trans-GAFs such as GRASP55. Once the GA membrane-associated GAFs are caught by HURP p725, they become stabilized and execute their functions on where HURP p725 resides. The HURP p725-regulated cis-GAFs such as GM130, GRASP65 and TRIP11, which function in promoting fusion between GA membrane and vesicles and lateral fusion of cisternae [34], stacking flattened cisterna and linking of stacks [5, 34], and fusion between curved and flattened membranes and lateral linking between stacks [14, 35], respectively. Hence, all these HURP p725 interacted GAFs function in regulating the Golgi forming process from early to late stage, thereby ensuring GA assembly from its cis-side on the surface of HURP p725.
Conclusion
The Ajuba/PRMT5/Aurora-A complex integrates the signals of protein methylation and phosphorylation to HURP, and the HURP p725 organizes GA by stabilizing and recruiting GAFs to its crescent-like structure, therefore shaping GA as a crescent ribbon. Therefore, the HURP p725 fiber serves a template to construct GA according to its shape.
Availability of data and materials
The data used to support the findings of this study are included within the article.
Abbreviations
- GA:
-
Golgi apparatus
- GAFs:
-
Golgi assembly factors
- WT:
-
Wild type
- ribbon:
-
Crescent ribbon shape
- ER:
-
Endoplasmic reticulum
- Brefeldin A:
-
BFA
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Acknowledgements
Ministry of Science and Technology (Taiwan), Taichung Veterans General Hospital (Taiwan), China Medical University (Taiwan), and China Medical Hospital (Taiwan).
Funding
This work was supported by the grants from the Ministry of Science and Technology (MOST 108–2320-B-260–001, MOST 109–2314-B-039–047-MY3, 111–2320-B-260–001), the Taichung Veterans General Hospital-National Chi Nan University Joint Research Program (TCVGH-NCNU 1107903, TCVGH-NCNU 1097903), the China Medical University and Hospital grant (DMR-110–140) awarded to Dr. Shao-Chih Chiu, and the Taichung Veterans General Hospital (TCVGH-1093207D).
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Yu-Ting Amber Liao, Xin-Ting Yang, Tong-You Wade Wei, and Jo-Mei Maureen Chen performed most of the experiments, Chun-Chih Jared Liu, Yu-Ting Jenny Huang, Yi-Chun Kuo, Chang-Xin Wan, Chiao-Yun Cheng, Chen-Yu Chu and Yun-Ru Jaoying Huang assisted with some other experiments. Shao-Chih Chiu and Chang-Tze Ricky Yu supervised the study, and Chang-Tze Ricky Yu conceived and wrote the paper. The author(s) read and approved the final manuscript.
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Additional file 1: Supplementary Figure 1.
Deduction of PRMT5-dependent methylation determinant sequence. Supplementary Figure 2. The HURP m122 antibodies and nm122 antibodies almost did not cross react. Supplementary Figure 3. Antibody specificity of HURP p725 and np725.
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Chiu, SC., Yang, XT., Wei, TY.W. et al. The crescent-like Golgi ribbon is shaped by the Ajuba/PRMT5/Aurora-A complex-modified HURP. Cell Commun Signal 21, 156 (2023). https://doi.org/10.1186/s12964-023-01167-4
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DOI: https://doi.org/10.1186/s12964-023-01167-4