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Table 1 GSEA analysis: gene sets significantly correlated with MAT-inducing treatments

From: Mesenchymal to amoeboid transition is associated with stem-like features of melanoma cells

Biological category

Gene set

Size

NES

FDR (q-value)

Enriched in

EGF signalling

NAGASHIMA_EGF_SIGNALING_UP

57

2.773

0.000

Treated

NAGASHIMA_NRG1_SIGNALING_UP

169

2.826

0.000

Treated

ZWANG_CLASS1_TRANSIENTLY_INDUCED_BY_EGF

497

2.455

0.000

Treated

AMIT_EGF_RESPONSE_60_HELA

43

2.305

0.000

Treated

ZWANG_CLASS3_TRANSIENTLY_INDUCED_BY_EGF

217

2.263

0.000

Treated

AMIT_EGF_RESPONSE_240_HELA

59

2.177

0.001

Treated

AMIT_EGF_RESPONSE_120_HELA

67

2.098

0.002

Treated

AMIT_EGF_RESPONSE_480_MCF10A

42

2.034

0.004

Treated

AMIT_EGF_RESPONSE_40_HELA

42

1.972

0.007

Treated

Epithelial-mesenchymal transition

ANASTASSIOU_CANCER_MESENCHYMAL_TRANSITION_SIGNATURE

63

-2.348

0.000

Control

AIGNER_ZEB1_TARGETS

34

-2.148

0.002

Control

ONDER_CDH1_TARGETS_1_DN

166

2.339

0.000

Treated

KARLSSON_TGFB1_TARGETS_UP

124

2.426

0.000

Treated

PLASARI_TGFB1_TARGETS_1HR_UP

34

2.296

0.000

Treated

Extracellular matrix

REACTOME_COLLAGEN_FORMATION

57

-2.547

0.000

Control

PROTEINACEOUS_EXTRACELLULAR_MATRIX

95

-2.224

0.001

Control

KEGG_ECM_RECEPTOR_INTERACTION

84

-2.264

0.001

Control

PID_INTEGRIN1_PATHWAY

66

-2.200

0.001

Control

EXTRACELLULAR_MATRIX_PART

54

-2.203

0.001

Control

KEGG_CELL_ADHESION_MOLECULES_CAMS

130

-2.127

0.002

Control

EXTRACELLULAR_MATRIX

96

-2.108

0.002

Control

REACTOME_EXTRACELL_MATRIX_ORGANIZATION

83

-2.063

0.004

Control

COLLAGEN

22

-1.994

0.007

Control

HOXA5 pathway

CHEN_HOXA5_TARGETS_9HR_UP

216

3.745

0.000

Treated

HDAC

SENESE_HDAC1_AND_HDAC2_TARGETS_UP

227

2.790

0.000

Treated

SENESE_HDAC1_TARGETS_UP

429

2.968

0.000

Treated

SENESE_HDAC2_TARGETS_UP

110

2.525

0.000

Treated

SENESE_HDAC3_TARGETS_UP

471

2.281

0.000

Treated

Stemness

NGUYEN_NOTCH1_TARGETS_DN

85

2.258

0.000

Treated

RAMALHO_STEMNESS_UP

201

2.089

0.002

Treated

Rho metabolic process

BERENJENO_TRANSFORMED_BY_RHOA_DN

381

-1.951

0.010

Control

CELLULAR_PROTEIN_CATABOLIC_PROCESS

56

2.164

0.001

Treated

REACTOME_DEADENYLATION_OF_MRNA

19

2.062

0.003

Treated

PROTEIN_CATABOLIC_PROCESS

64

2.058

0.003

Treated

MRNA_METABOLIC_PROCESS

83

1.940

0.009

Treated

OXIDOREDUCTASE_ACTIVITY

281

-2.123

0.002

Control

OXIDOREDUCTASE_ACTIVITY_GO_0016616

56

-1.991

0.007

Control

OXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS

62

-1.951

0.010

Control

Metastasis

CHANDRAN_METASTASIS_UP

197

1.975

0.007

Treated

 

CHANDRAN_METASTASIS_TOP50_UP

37

1.967

0.007

Treated

 

PEDERSEN_METASTASIS_BY_ERBB2_ISOFORM_1

45

2.300

0.000

Treated