From: Mesenchymal to amoeboid transition is associated with stem-like features of melanoma cells
Biological category | Gene set | Size | NES | FDR (q-value) | Enriched in |
---|---|---|---|---|---|
EGF signalling | NAGASHIMA_EGF_SIGNALING_UP | 57 | 2.773 | 0.000 | Treated |
NAGASHIMA_NRG1_SIGNALING_UP | 169 | 2.826 | 0.000 | Treated | |
ZWANG_CLASS1_TRANSIENTLY_INDUCED_BY_EGF | 497 | 2.455 | 0.000 | Treated | |
AMIT_EGF_RESPONSE_60_HELA | 43 | 2.305 | 0.000 | Treated | |
ZWANG_CLASS3_TRANSIENTLY_INDUCED_BY_EGF | 217 | 2.263 | 0.000 | Treated | |
AMIT_EGF_RESPONSE_240_HELA | 59 | 2.177 | 0.001 | Treated | |
AMIT_EGF_RESPONSE_120_HELA | 67 | 2.098 | 0.002 | Treated | |
AMIT_EGF_RESPONSE_480_MCF10A | 42 | 2.034 | 0.004 | Treated | |
AMIT_EGF_RESPONSE_40_HELA | 42 | 1.972 | 0.007 | Treated | |
Epithelial-mesenchymal transition | ANASTASSIOU_CANCER_MESENCHYMAL_TRANSITION_SIGNATURE | 63 | -2.348 | 0.000 | Control |
AIGNER_ZEB1_TARGETS | 34 | -2.148 | 0.002 | Control | |
ONDER_CDH1_TARGETS_1_DN | 166 | 2.339 | 0.000 | Treated | |
KARLSSON_TGFB1_TARGETS_UP | 124 | 2.426 | 0.000 | Treated | |
PLASARI_TGFB1_TARGETS_1HR_UP | 34 | 2.296 | 0.000 | Treated | |
Extracellular matrix | REACTOME_COLLAGEN_FORMATION | 57 | -2.547 | 0.000 | Control |
PROTEINACEOUS_EXTRACELLULAR_MATRIX | 95 | -2.224 | 0.001 | Control | |
KEGG_ECM_RECEPTOR_INTERACTION | 84 | -2.264 | 0.001 | Control | |
PID_INTEGRIN1_PATHWAY | 66 | -2.200 | 0.001 | Control | |
EXTRACELLULAR_MATRIX_PART | 54 | -2.203 | 0.001 | Control | |
KEGG_CELL_ADHESION_MOLECULES_CAMS | 130 | -2.127 | 0.002 | Control | |
EXTRACELLULAR_MATRIX | 96 | -2.108 | 0.002 | Control | |
REACTOME_EXTRACELL_MATRIX_ORGANIZATION | 83 | -2.063 | 0.004 | Control | |
COLLAGEN | 22 | -1.994 | 0.007 | Control | |
HOXA5 pathway | CHEN_HOXA5_TARGETS_9HR_UP | 216 | 3.745 | 0.000 | Treated |
HDAC | SENESE_HDAC1_AND_HDAC2_TARGETS_UP | 227 | 2.790 | 0.000 | Treated |
SENESE_HDAC1_TARGETS_UP | 429 | 2.968 | 0.000 | Treated | |
SENESE_HDAC2_TARGETS_UP | 110 | 2.525 | 0.000 | Treated | |
SENESE_HDAC3_TARGETS_UP | 471 | 2.281 | 0.000 | Treated | |
Stemness | NGUYEN_NOTCH1_TARGETS_DN | 85 | 2.258 | 0.000 | Treated |
RAMALHO_STEMNESS_UP | 201 | 2.089 | 0.002 | Treated | |
Rho metabolic process | BERENJENO_TRANSFORMED_BY_RHOA_DN | 381 | -1.951 | 0.010 | Control |
CELLULAR_PROTEIN_CATABOLIC_PROCESS | 56 | 2.164 | 0.001 | Treated | |
REACTOME_DEADENYLATION_OF_MRNA | 19 | 2.062 | 0.003 | Treated | |
PROTEIN_CATABOLIC_PROCESS | 64 | 2.058 | 0.003 | Treated | |
MRNA_METABOLIC_PROCESS | 83 | 1.940 | 0.009 | Treated | |
OXIDOREDUCTASE_ACTIVITY | 281 | -2.123 | 0.002 | Control | |
OXIDOREDUCTASE_ACTIVITY_GO_0016616 | 56 | -1.991 | 0.007 | Control | |
OXIDOREDUCTASE_ACTIVITY_ACTING_ON_CH_OH_GROUP_OF_DONORS | 62 | -1.951 | 0.010 | Control | |
Metastasis | CHANDRAN_METASTASIS_UP | 197 | 1.975 | 0.007 | Treated |
 | CHANDRAN_METASTASIS_TOP50_UP | 37 | 1.967 | 0.007 | Treated |
 | PEDERSEN_METASTASIS_BY_ERBB2_ISOFORM_1 | 45 | 2.300 | 0.000 | Treated |